How to draw bonds and chains

Press D for the Bond tool. Click empty canvas for a bond, then click an atom to grow a new bond from it. Press G for chain and drag to pull out a zigzag chain; the carbon count follows the pointer, and Shift locks the direction.

On a Mac, Ctrl is Cmd.

Draw bonds one at a time

  1. Press D for the Bond tool. The row above the toolbar shows the bond styles, with single picked.

    Bond tool variants: single, double, triple, chain, then wedge, hash, wavy and the other stereo and special bonds.Bond tool variants: single, double, triple, chain, then wedge, hash, wavy and the other stereo and special bonds.

  2. Click an empty spot on the canvas. A single bond appears, with a carbon at each end.

  3. Click an atom to grow a new bond from it. Athanor picks a zigzag angle for you, so a few clicks along the end atom make a tidy chain.

  4. Point at any atom and press a letter to change its element, such as O for oxygen or N for nitrogen. See How to change an atom to another element.

Draw a whole chain

  1. With the Bond tool on, press G (or choose chain in the row above the toolbar).

  2. Drag on the canvas. A zigzag chain follows the pointer, and a count beside it shows how many carbons it has so far.

    Dragging a chain, with 7 C beside the pointer for seven carbons.Dragging a chain, with 7 C beside the pointer for seven carbons.

  3. Hold Shift while you drag to lock the chain's direction.

  4. Let go to place it. One Ctrl+Z removes the whole chain.

Pressing G and dragging out a carbon chain, counted as it grows.

Tip

Know the length already? Click once with chain instead of dragging, type a number in Chain length (carbons) (1 to 200) and press Enter.

Fix mistakes

Ctrl+Z undoes the last step and Ctrl+Shift+Z redoes it. The Erase tool (E) removes what you click. A structure that breaks a chemistry rule, such as a carbon with five bonds, is flagged in the issues badge at the bottom left of the canvas, never silently changed.

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Last updated Nov 12, 2026